Article

Hierarchical genomic feature annotation with variable-length queries

2026-03-18

Abstract excerpt

K -mer-based methods are widely used for sequence classification in metagenomics, pangenomics, and RNA-seq analysis, but existing tools face important limitations: they typically require a fixed k -mer length chosen at index construction time, handle multi-matching k -mers (whose origin in the indexed data is ambiguous) in ad-hoc ways, and some resort to lossy approximations, complicating interpretation. We pres...

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Literature Corpus work: 4e2384b1-15e9-5881-9711-92553614e5e9
DOI: 10.64898/2026.03.15.711907

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