Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Genome-wide pervasiveness and localized variation of [Formula: see text]-mer-based genomic signatures in eukaryotes.

Scientific reports - 12 Jun 2026

Sadjadi Niousha, de Souza Camila P E, Randhawa Gurjit S, Hill Kathleen A, Kari Lila

Abstract excerpt

Genomic signatures-taxon-specific patterns in nucleotide composition-are widely used for taxonomic assignment and comparative genomics, yet their genome-wide pervasiveness across Telomere-to-Telomere assemblies, particularly within functionally diverse and highly repetitive regions, remains undercharacterized. We address this gap with an alignment-free, [Formula: see text]-mer-based analysis using Frequency Chaos...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Eukaryota
Share to Genetic Variation

Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

Share to Genome, Human

Share to Genomics

Source

Open in PubMed Open full text

Identifiers

PMID: 42285985
DOI: 10.1038/s41598-026-40591-7
PMCID: PMC13294376

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 23 Oct 2026.

Related research

Semantic proximity does not establish scientific evidence. Graph snapshot: 2026-09-29.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Genome-wide pervasiveness and localized variation of [Formula: see text]-mer-based genomic signatures in eukaryotes.PMID 42285985Read ↗

Genome-wide Pervasiveness and Localized Variation of <i>k</i> -mer-based Genomic Signatures in EukaryotesSemantic proximity Read ↗

Diversity and Genomic Organization of Non-B DNA Motifs in Haplotype-Resolved Human Genome AssembliesSemantic proximity Read ↗

VAMPIRE: Analyzing variation and motif pattern in tandem repeatsSemantic proximity Read ↗

FuzzyClusTeR: a web server for analysis of tandem and diffuse DNA repeat clusters with application to telomeric-like repeatsSemantic proximity Read ↗

Hierarchical genomic feature annotation with variable-length queriesSemantic proximity Read ↗

Non-canonical DNA in human and other ape telomere-to-telomere genomesSemantic proximity Read ↗

The repertoire of short tandem repeats across the tree of lifeSemantic proximity Read ↗

A long-read human pangenome initiative for comprehensive interpretation of nuclear-embedded mitochondrial DNASemantic proximity Read ↗

Read-Consistent Minimum Unique Substrings: A Parameter-Free, Linear-Time Framework for Genomic Sequence RepresentationSemantic proximity Read ↗

The Genomic Kaleidoscope: On the Hidden Dimensions of Within-Species Genomic Diversity.Semantic proximity Read ↗

Efficient Identification of Short Tandem Repeats via Context-Aware Motif Discovery and Ultra-Fast Sequence AlignmentSemantic proximity Read ↗

A Perfect Match Genomic Landscape Provides a Unified Framework for the Precise Detection of Variation in Natural and Synthetic Haploid Genomes.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.