Article

PERREO: An integrated pipeline for repetitive elements analysis enables the repeatome expression profiling in cancer

2026-04-10

Abstract excerpt

<h4>ABSTRACT</h4> Transcriptome-wide profiling of repetitive elements expression reveals transposable element-derived transcripts that are deregulated in diverse biological contexts including cancer. However, most RNA-seq pipelines are optimized for annotated genes and substantially undercount repeat RNA molecules, limiting their discovery and characterization. Here we present PERREO, a comprehensive, user-friend...

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Literature Corpus work: 178f93a9-0f7a-5b60-8fee-a6d0ecbf89f3
DOI: 10.64898/2026.04.08.714730

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