Article

SQuIRE: Software for Quantifying Interspersed Repeat Elements

2018-05-04

Abstract excerpt

Transposable elements are interspersed repeat sequences that make up much of the human genome. Conventional approaches to RNA-seq analysis often exclude these sequences, fail to optimally adjudicate read alignments, or align reads to interspersed repeat consensus sequences without considering these transcripts in their genomic contexts. As a result, repetitive sequence contributions to transcriptomes are not well...

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Literature Corpus work: 09f7d8b5-f2fa-55cd-a361-be12fe5869d1
DOI: 10.1101/313999

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