Article

Genomic neighbor typing for bacterial outbreak surveillance

2022-02-06

Abstract excerpt

Genomic neighbor typing enables heuristic inference of bacterial lineages and phenotypes from nanopore sequencing data. However, small reference databases may not be sufficiently representative of the diversity of lineages and genotypes present in a collection of isolates. In this study, we explore the use of genomic neighbor typing for surveillance of community-associated Staphylococcus aureus outbreaks in Papua...

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Literature Corpus work: 08d2d1ae-34ed-5e0a-b3b4-d946611e25c7
DOI: 10.1101/2022.02.05.479210

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