Article

Phylodynamic modelling of bacterial outbreaks using nanopore sequencing

2021-05-01

Abstract excerpt

Nanopore sequencing and phylodynamic modelling have been used to reconstruct the transmission dynamics of viral epidemics, but their application to bacterial pathogens has remained challenging. Here, we implement Random Forest models for single nucleotide polymorphism (SNP) polishing to estimate divergence and effective reproduction numbers (R e ) of two community-associated, methicillin-resistant Staphylococcus...

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Literature Corpus work: ddd83325-f1df-5b72-9ebe-5880316c4098
DOI: 10.1101/2021.04.30.442218

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