Article

Fast and flexible bacterial genomic epidemiology with PopPUNK

2018-07-06

Abstract excerpt

The routine use of genomics for disease surveillance provides the opportunity for high-resolution bacterial epidemiology. However, current whole-genome clustering and multi-locus typing approaches do not fully exploit core and accessory genomic variation, and cannot both automatically identify, and subsequently expand, clusters of significantly-similar isolates in large datasets and across species. Here we describ...

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Literature Corpus work: 29fd0116-83df-5bde-8f0d-ce4d865fdb09
DOI: 10.1101/360917

Open publication

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