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Article

Accounting for reporting delays in real-time phylodynamic analyses with preferential sampling.

PLoS computational biology - 1 May 2025

Medina Catalina M, Palacios Julia A, Minin Volodymyr M

Abstract excerpt

The COVID-19 pandemic demonstrated that fast and accurate analysis of continually collected infectious disease surveillance data is crucial for situational awareness and policy making. Coalescent-based phylodynamic analysis can use genetic sequences of a pathogen to estimate changes in its effective population size, a measure of genetic diversity. These changes in effective population size can be connected to the...

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PMID: 40327728
DOI: 10.1371/journal.pcbi.1012970
PMCID: PMC12101774

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