Article

EpiFusion: Joint inference of the effective reproduction number by integrating phylodynamic and epidemiological modelling with particle filtering

2023-12-18

Abstract excerpt

Accurately estimating the effective reproduction number (Rt) of a circulating pathogen is a fundamental challenge in the study of infectious disease. The fields of epidemiology and pathogen phylodynamics both share this goal, but to date, methodologies and data employed by each remain largely distinct. Here we present EpiFusion: a joint approach that can be used to harness the complementary strengths of each field...

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Literature Corpus work: 225e8109-20cd-5f66-b03b-a5d83d068f85
DOI: 10.1101/2023.12.18.572106

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