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Rapid incidence estimation from SARS-CoV-2 genomes reveals decreased case detection in Europe during summer 2020

14 Oct 2021

Abstract excerpt

By October 2021, 230 million SARS-CoV-2 diagnoses have been reported. Yet, a considerable proportion of cases remains undetected. Here, we propose GInPipe, a method that rapidly reconstructs SARS-CoV-2 incidence profiles solely from publicly available, time-stamped viral genomes. We validate GInPipe against simulated outbreaks and elaborate phylodynamic analyses. Using available sequence data, we reconstruct...

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PMID: 34650062
DOI: 10.1038/s41467-021-26267-y

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