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Identification of oil palm cis-regulatory elements based on DNA free energy and single nucleotide polymorphism density.

Computational biology and chemistry - 1 Oct 2023

Aditama Redi, Tanjung Zulfikar Achmad, Aprilyanto Victor, Sudania Widyartini Made, Utomo Condro, Liwang Tony

Abstract excerpt

Transcription control through cis-regulatory elements (CREs) is one of important regulators of gene expression. This study aimed to identify the location of CREs in oil palm (Elaeis guineensis Jacq.) using the combination of DNA free energy and single nucleotide polymorphism (SNP) density approaches. Promoter region sequences were extracted oil palm genome spanning from 1500 nucleotides (nt) upstream to 1000 nt...

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PMID: 37481844
DOI: 10.1016/j.compbiolchem.2023.107931

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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