Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Plant_SNP_TATA_Z-Tester: A Web Service That Unequivocally Estimates the Impact of Proximal Promoter Mutations on Plant Gene Expression.

International journal of molecular sciences - 4 Aug 2022

Rasskazov Dmitry, Chadaeva Irina, Sharypova Ekaterina, Zolotareva Karina, Khandaev Bato, Ponomarenko Petr, Podkolodnyy Nikolay, Tverdokhleb Natalya, Vishnevsky Oleg, Bogomolov Anton, Podkolodnaya Olga, Savinkova Ludmila, Zemlyanskaya Elena, Golubyatnikov Vadimir, Kolchanov Nikolay, Ponomarenko Mikhail

Abstract excerpt

Synthetic targeted optimization of plant promoters is becoming a part of progress in mainstream postgenomic agriculture along with hybridization of cultivated plants with wild congeners, as well as marker-assisted breeding. Therefore, here, for the first time, we compiled all the experimental data-on mutational effects in plant proximal promoters on gene expression-that we could find in PubMed. Some of these...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Gene Expression
Share to Genes, Plant

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Mutation

Share to Promoter Regions, Genetic

Share to TATA Box

Share to Transcription, Genetic

Source

Open in PubMed Open full text

Identifiers

PMID: 35955817
DOI: 10.3390/ijms23158684
PMCID: PMC9369029

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Plant_SNP_TATA_Z-Tester: A Web Service That Unequivocally Estimates the Impact of Proximal Promoter Mutations on Plant Gene Expression.PMID 35955817Read ↗

AtSNP_TATAdb: Candidate Molecular Markers of Plant Advantages Related to Single Nucleotide Polymorphisms within Proximal Promoters of Arabidopsis thaliana L.Semantic proximity Read ↗

Modeling 0.6 million genes for the rational design of functional cis-regulatory variants and de novo design of cis-regulatory sequences.Semantic proximity Read ↗

Genome-wide modelling of plant transcription factor binding captures regulatory variants associated with phenotypic traits.Semantic proximity Read ↗

Deep learning the cis-regulatory code for gene expression in selected model plants.Semantic proximity Read ↗

Gene Expression and Transcription Factor Binding Tests Using Mutated-Promoter Reporter Lines.Semantic proximity Read ↗

PlantDeepSEA, a deep learning-based web service to predict the regulatory effects of genomic variants in plants.Semantic proximity Read ↗

An experimental verification of the predicted effects of promoter TATA-box polymorphisms associated with human diseases on interactions between the TATA boxes and TATA-binding protein.Semantic proximity Read ↗

Gene regulatory network reconstruction using Bayesian networks, the Dantzig Selector, the Lasso and their meta-analysis.Semantic proximity Read ↗

Killing two birds with one stone: Model plant systems as a tool to teach the fundamental concepts of gene expression while analyzing biological data.Semantic proximity Read ↗

Defining the genetic components of callus formation: A GWAS approach.Semantic proximity Read ↗

Identification of oil palm cis-regulatory elements based on DNA free energy and single nucleotide polymorphism density.Semantic proximity Read ↗

The effects of protein interactions, gene essentiality and regulatory regions on expression variation.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.