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Article

TFBSshape: an expanded motif database for DNA shape features of transcription factor binding sites.

Nucleic acids research - 8 Jan 2020

Chiu Tsu-Pei, Xin Beibei, Markarian Nicholas, Wang Yingfei, Rohs Remo

Abstract excerpt

TFBSshape (https://tfbsshape.usc.edu) is a motif database for analyzing structural profiles of transcription factor binding sites (TFBSs). The main rationale for this database is to be able to derive mechanistic insights in protein-DNA readout modes from sequencing data without available structures. We extended the quantity and dimensionality of TFBSshape, from mostly in vitro to in vivo binding and from...

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Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

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Source

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Identifiers

PMID: 31665425
DOI: 10.1093/nar/gkz970
PMCID: PMC7145579

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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