Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

RNA secondary structure prediction with pseudoknots: Contribution of algorithm versus energy model.

PloS one - 1 Jan 2018

Jabbari Hosna, Wark Ian, Montemagno Carlo

Abstract excerpt

MOTIVATION: RNA is a biopolymer with various applications inside the cell and in biotechnology. Structure of an RNA molecule mainly determines its function and is essential to guide nanostructure design. Since experimental structure determination is time-consuming and expensive, accurate computational prediction of RNA structure is of great importance. Prediction of RNA secondary structure is relatively simpler...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Algorithms
Share to Databases, Genetic
Share to Nucleic Acid Conformation

Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

Share to Reproducibility of Results

Share to RNA, Bacterial

Share to RNA, Ribosomal, 5S

Share to Software

Source

Open in PubMed Open full text

Identifiers

PMID: 29621250
DOI: 10.1371/journal.pone.0194583
PMCID: PMC5886407

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence. Graph snapshot: 2026-09-29.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

RNA secondary structure prediction with pseudoknots: Contribution of algorithm versus energy model.PMID 29621250Read ↗

Predicting RNA pseudoknot folding thermodynamics.Semantic proximity Read ↗

The role of sequence in altering the unfolding pathway of an RNA pseudoknot: a steered molecular dynamics study.Semantic proximity Read ↗

Local structural and environmental factors define the efficiency of an RNA pseudoknot involved in programmed ribosomal frameshift process.Semantic proximity Read ↗

RNA secondary structure: physical and computational aspects.Semantic proximity Read ↗

RNA Structure: Past, Future, and Gene Therapy ApplicationsSemantic proximity Read ↗

Deciphering the sequence-dependent unfolding pathways of an RNA pseudoknot with steered molecular dynamics.Semantic proximity Read ↗

The effects of structure on pre-mRNA processing and stability.Semantic proximity Read ↗

Reconstruction of natural RNA sequences from RNA shape, thermodynamic stability, mutational robustness, and linguistic complexity by evolutionary computation.Semantic proximity Read ↗

Determination of RNA structure and thermodynamics.Semantic proximity Read ↗

NMR structure of a classical pseudoknot: interplay of single- and double-stranded RNA.Semantic proximity Read ↗

Functional importance of telomerase pseudoknot revealed by single-molecule analysis.Semantic proximity Read ↗

Structure of the human telomerase RNA pseudoknot reveals conserved tertiary interactions essential for function.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.