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Article

Predicting RNA pseudoknot folding thermodynamics.

Nucleic acids research - 1 Jan 2006

Cao Song, Chen Shi-Jie

Abstract excerpt

Based on the experimentally determined atomic coordinates for RNA helices and the self-avoiding walks of the P (phosphate) and C4 (carbon) atoms in the diamond lattice for the polynucleotide loop conformations, we derive a set of conformational entropy parameters for RNA pseudoknots. Based on the entropy parameters, we develop a folding thermodynamics model that enables us to compute the sequence-specific RNA...

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Identifiers

PMID: 16709732
DOI: 10.1093/nar/gkl346
PMCID: PMC1463895

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Source receipt: pubmed, retrieved 7 Sept 2026.

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