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Article

Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics.

PloS one - 1 Jan 2017

Siegwald Léa, Touzet Hélène, Lemoine Yves, Hot David, Audebert Christophe, Caboche Ségolène

Abstract excerpt

Targeted metagenomics, also known as metagenetics, is a high-throughput sequencing application focusing on a nucleotide target in a microbiome to describe its taxonomic content. A wide range of bioinformatics pipelines are available to analyze sequencing outputs, and the choice of an appropriate tool is crucial and not trivial. No standard evaluation method exists for estimating the accuracy of a pipeline for...

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Identifiers

PMID: 28052134
DOI: 10.1371/journal.pone.0169563
PMCID: PMC5215245

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 5 Sept 2026. Manifest publication-graph-cohort-2026-09-05.1.

Source receipt: pubmed, retrieved 5 Sept 2026.

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