Article

A comparison of bioinformatics pipelines for compositional analysis of the human gut microbiome

2023-02-14

Abstract excerpt

Investigating the impact of gut microbiome on human health is a rapidly growing area of research. A significant limiting factor in the progress in this field is the lack of consistency between study results, which hampers the correct biological interpretation of findings. One of the reasons is variation of the applied bioinformatics analysis pipelines. This study aimed to compare five frequently used bioinformatic...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 7454762b-eb0f-5aa0-9f2a-30ca54beb4ff
DOI: 10.1101/2023.02.13.528280

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

A comparison of bioinformatics pipelines for compositional analysis of the human gut microbiomeDOI 10.1101/2023.02.13.528280Read

Comparison of Bioinformatics Pipelines and Operating Systems for the Analyses of 16S rRNA Gene Amplicon Sequences in Human Fecal SamplesSemantic proximity Read

Evaluating the accuracy of amplicon-based microbiome computational pipelines on simulated human gut microbial communitiesSemantic proximity Read

Knomics-Biota - a system for exploratory analysis of human gut microbiota dataSemantic proximity Read

MicrobiotaCN: an on-line, standard, convenient and comprehensive microbiome data analysis platform based on self-built gut prokaryotic genome collectionSemantic proximity Read

Assessing 16S marker gene survey data analysis methods using mixtures of human stool sample DNA extractsSemantic proximity Read

A robust metatranscriptomic technology for population-scale studies of diet, gut microbiome, and human healthSemantic proximity Read

WITOD: A Tool for Within-Taxon Operational Taxonomic Unit Diversity AnalysisSemantic proximity Read

Host phenotype classification from human microbiome data is mainly driven by the presence of microbial taxa.Semantic proximity Read

A comprehensive automated pipeline for human microbiome sampling, 16S rRNA gene sequencing and bioinformatics processingSemantic proximity Read

End-to-end assessment of fecal bacteriome analysis: from sample processing to DNA sequencing and bioinformatics resultsSemantic proximity Read

A review of common methods used in the analysis of human microbiome sequencing dataSemantic proximity Read

Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics.Semantic proximity Read