Article

One Codex: A Sensitive and Accurate Data Platform for Genomic Microbial Identification

2015-09-25

Abstract excerpt

1 <h4>ABSTRACT</h4> High-throughput sequencing (HTS) is increasingly being used for broad applications of microbial char-acterization, such as microbial ecology, clinical diagnosis, and outbreak epidemiology. However, the analytical task of comparing short sequence reads against the known diversity of microbial life has proved to be computationally challenging. The One Codex data platform was created with the dua...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 481fd920-127d-53a2-9cde-6ee9d8253613
DOI: 10.1101/027607

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

One Codex: A Sensitive and Accurate Data Platform for Genomic Microbial IdentificationDOI 10.1101/027607Read

NANOTAXI: A Shiny-Based GUI for Real-Time Classification and Analysis of 16S rRNA Nanopore ReadsSemantic proximity Read

GenomicSign: A computational method to discover unique, specific, and amplifiable signatures of target genomic sequencesSemantic proximity Read

PanGIA: A Metagenomics Analytical Framework for Routine Biosurveillance and Clinical Pathogen DetectionSemantic proximity Read

Linked machine learning classifiers improve species classification of fungi when using error-prone long-reads on extended metabarcodesSemantic proximity Read

OCTOPUS: Disk-based, Multiplatform, Mobile-friendly Metagenomics ClassifierSemantic proximity Read

A Computational Toolset for Rapid Identification of SARS-CoV-2, other Viruses, and Microorganisms from Sequencing DataSemantic proximity Read

GenomicGapID: Leveraging Spatial Distribution of Conserved Genomic Sites for Broad-Spectrum Microbial IdentificationSemantic proximity Read

Comprehensive Benchmarking and Ensemble Approaches for Metagenomic ClassifiersSemantic proximity Read

Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics.Semantic proximity Read

Large scale automated phylogenomic analysis of bacterial isolates and the Evergreen Online platform.Semantic proximity Read

Castanet: a pipeline for rapid analysis of targeted multi-pathogen genomic dataSemantic proximity Read

Rapid nanopore sequencing and predictive susceptibility testing of positive blood cultures from intensive care patients with sepsisSemantic proximity Read