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Comparison of Bioinformatics Pipelines and Operating Systems for the Analyses of 16S rRNA Gene Amplicon Sequences in Human Fecal Samples

17 Jun 2020

Abstract excerpt

Amplicon high-throughput sequencing of 16S ribosomal RNA (rRNA) gene is currently the most widely used technique to investigate complex gut microbial communities. Microbial identification might be influenced by several factors, including the choice of bioinformatic pipelines, making comparisons across studies difficult. Here, we compared 4 commonly used pipelines (QIIME2, Bioconductor, UPARSE and mothur) run on...

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PMID: 32636817
DOI: 10.3389/fmicb.2020.01262

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