Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Rtools: a web server for various secondary structural analyses on single RNA sequences.

Nucleic acids research - 8 Jul 2016

Hamada Michiaki, Ono Yukiteru, Kiryu Hisanori, Sato Kengo, Kato Yuki, Fukunaga Tsukasa, Mori Ryota, Asai Kiyoshi

Abstract excerpt

The secondary structures, as well as the nucleotide sequences, are the important features of RNA molecules to characterize their functions. According to the thermodynamic model, however, the probability of any secondary structure is very small. As a consequence, any tool to predict the secondary structures of RNAs has limited accuracy. On the other hand, there are a few tools to compensate the imperfect...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Base Pairing
Share to Computer Graphics

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Internet

Share to Nucleic Acid Conformation

Share to RNA Folding

Share to Sequence Analysis, RNA

Share to Thermodynamics

Source

Open in PubMed Open full text

Identifiers

PMID: 27131356
DOI: 10.1093/nar/gkw337
PMCID: PMC4987903

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Rtools: a web server for various secondary structural analyses on single RNA sequences.PMID 27131356Read ↗

RNA secondary structure: physical and computational aspects.Semantic proximity Read ↗

Incorporating phylogenetic-based covarying mutations into RNAalifold for RNA consensus structure prediction.Semantic proximity Read ↗

RNAex: an RNA secondary structure prediction server enhanced by high-throughput structure-probing data.Semantic proximity Read ↗

ConStruct: a tool for thermodynamic controlled prediction of conserved secondary structure.Semantic proximity Read ↗

RNA secondary structure prediction with pseudoknots: Contribution of algorithm versus energy model.Semantic proximity Read ↗

Mutational analysis in RNAs: comparing programs for RNA deleterious mutation prediction.Semantic proximity Read ↗

Predicting RNA folding thermodynamics with a reduced chain representation model.Semantic proximity Read ↗

The RNAmute web server for the mutational analysis of RNA secondary structures.Semantic proximity Read ↗

Automatic RNA secondary structure prediction with a comparative approach.Semantic proximity Read ↗

MutaRNA: analysis and visualization of mutation-induced changes in RNA structure.Semantic proximity Read ↗

A high-throughput approach to profile RNA structure.Semantic proximity Read ↗

Classification of RNA secondary structures using the techniques of cluster analysis.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.