Article
Classification of RNA secondary structures using the techniques of cluster analysis.
Journal of theoretical biology - 7 Nov 1996
Nakaya A, Yonezawa A, Yamamoto K
Abstract excerpt
An RNA molecule has a lot of suboptimal secondary structures. Some of these suboptimal structures are very similar and some are entirely different. In some cases, the free energy of these suboptimal structures does not differ much from that of the optimal structure. In order to characterize this relationship more clearly, we defined a metric among the secondary structures by the unweighted pair group method,...
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