Article
hsphase: an R package for pedigree reconstruction, detection of recombination events, phasing and imputation of half-sib family groups.
BMC bioinformatics - 7 Jun 2014
Ferdosi Mohammad H, Kinghorn Brian P, van der Werf Julius H J, Lee Seung Hwan, Gondro Cedric
Abstract excerpt
BACKGROUND: Identification of recombination events and which chromosomal segments contributed to an individual is useful for a number of applications in genomic analyses including haplotyping, imputation, signatures of selection, and improved estimates of relationship and probability of identity by descent. Genotypic data on half-sib family groups are widely available in livestock genomics. This structure makes...
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