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Benchmarking phasing software with a whole-genome sequenced cattle pedigree.

BMC genomics - 15 Feb 2022

Oget-Ebrad Claire, Kadri Naveen Kumar, Moreira Gabriel Costa Monteiro, Karim Latifa, Coppieters Wouter, Georges Michel, Druet Tom

Abstract excerpt

BACKGROUND: Accurate haplotype reconstruction is required in many applications in quantitative and population genomics. Different phasing methods are available but their accuracy must be evaluated for samples with different properties (population structure, marker density, etc.). We herein took advantage of whole-genome sequence data available for a Holstein cattle pedigree containing 264 individuals, including...

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Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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PMID: 35164677
DOI: 10.1186/s12864-022-08354-6
PMCID: PMC8845340

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