Article
AlphaFamImpute: high-accuracy imputation in full-sib families from genotype-by-sequencing data.
Bioinformatics (Oxford, England) - 1 Aug 2020
Whalen Andrew, Gorjanc Gregor, Hickey John M
Abstract excerpt
SUMMARY: AlphaFamImpute is an imputation package for calling, phasing and imputing genome-wide genotypes in outbred full-sib families from single nucleotide polymorphism (SNP) array and genotype-by-sequencing (GBS) data. GBS data are increasingly being used to genotype individuals, especially when SNP arrays do not exist for a population of interest. Low-coverage GBS produces data with a large number of missing...
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