Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Genome-wide copy number alterations detection in fresh frozen and matched FFPE samples using SNP 6.0 arrays.

Genes, chromosomes & cancer - 1 Nov 2008

Tuefferd Marianne, De Bondt An, Van Den Wyngaert Ilse, Talloen Willem, Verbeke Tobias, Carvalho Benilton, Clevert Djork-Arne, Alifano Marco, Raghavan Nandini, Amaratunga Dhammika, Göhlmann Hinrich, Broët Philippe, Camilleri-Broët Sophie

Abstract excerpt

SNP arrays offer the opportunity to get a genome-wide view on copy number alterations and are increasingly used in oncology. DNA from formalin-fixed paraffin-embedded material (FFPE) is partially degraded which limits the application of those technologies for retrospective studies. We present the use of Affymetrix GeneChip SNP6.0 for identification of copy number alterations in fresh frozen (FF) and matched FFPE...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to DNA, Neoplasm
Share to Formaldehyde

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Gene Dosage

Share to Genome, Human

Share to Oligonucleotide Array Sequence Analysis

Share to Paraffin Embedding

Share to Polymorphism, Single Nucleotide

Source

Identifiers

PMID: 18663747
DOI: 10.1002/gcc.20599

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Genome-wide copy number alterations detection in fresh frozen and matched FFPE samples using SNP 6.0 arrays.PMID 18663747Read ↗

The utility and limitation of single nucleotide polymorphism analysis on whole genome amplified mesenchymal tumour DNA in formalin fixed tumour samples.Semantic proximity Read ↗

Oligonucleotide array outperforms SNP array on formalin-fixed paraffin-embedded clinical samples.Semantic proximity Read ↗

Evaluating the repair of DNA derived from formalin-fixed paraffin-embedded tissues prior to genomic profiling by SNP-CGH analysis.Semantic proximity Read ↗

High-resolution copy number analysis of paraffin-embedded archival tissue using SNP BeadArrays.Semantic proximity Read ↗

Copy number and loss of heterozygosity detected by SNP array of formalin-fixed tissues using whole-genome amplification.Semantic proximity Read ↗

Whole genome SNP arrays using DNA derived from formalin-fixed, paraffin-embedded ovarian tumor tissue.Semantic proximity Read ↗

Crucial parameters for precise copy number variation detection in formalin-fixed paraffin-embedded solid cancer samples.Semantic proximity Read ↗

Genome-wide, high-resolution detection of copy number, loss of heterozygosity, and genotypes from formalin-fixed, paraffin-embedded tumor tissue using microarrays.Semantic proximity Read ↗

Analysis of acquired genomic copy number aberrations and regions of loss of heterozygosity in acute myelogenous leukemia genomes using Affymetrix SNP 6.0 arrays and supporting software tools.Semantic proximity Read ↗

Microarray profiling of DNA extracted from FFPE tissues using SNP 6.0 Affymetrix platform.Semantic proximity Read ↗

Random DNA fragmentation allows detection of single-copy, single-exon alterations of copy number by oligonucleotide array CGH in clinical FFPE samplesSemantic proximity Read ↗

Tumor classification based on DNA copy number aberrations determined using SNP arrays.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.