Article

Comparative Annotation Toolkit (CAT) - simultaneous clade and personal genome annotation

2017-12-08

Abstract excerpt

<h4>ABSTRACT</h4> The recent introductions of low-cost, long-read, and read-cloud sequencing technologies coupled with intense efforts to develop efficient algorithms have made affordable, high-quality de novo sequence assembly a realistic proposition. The result is an explosion of new, ultra-contiguous genome assemblies. To compare these genomes we need robust methods for genome annotation. We describe the full...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: c3478928-28f2-5b9b-9485-0e2ce7e48422
DOI: 10.1101/231118

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Comparative Annotation Toolkit (CAT) - simultaneous clade and personal genome annotationDOI 10.1101/231118Read

A revamped rat reference genome improves the discovery of genetic diversity in laboratory rats.Semantic proximity Read

Liftoff: an accurate gene annotation mapping toolSemantic proximity Read

A technology-agnostic long-read analysis pipeline for transcriptome discovery and quantificationSemantic proximity Read

Combining DNA and protein alignments to improve genome annotation with LiftOnSemantic proximity Read

Accurate, comprehensive gene annotation and ortholog identification across thousands of vertebrate genomes with TOGA2Semantic proximity Read

The Paipu framework enables creation of a large-scale mammalian cancer transcriptomics atlasSemantic proximity Read

HISAT: Hierarchical Indexing for Spliced Alignment of TranscriptsSemantic proximity Read

The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversitySemantic proximity Read

High-resolution comparative analysis of great ape genomes.Semantic proximity Read

Ensembl's 10th year.Semantic proximity Read

Genome sequence of the Brown Norway rat yields insights into mammalian evolution.Semantic proximity Read

Ensembl Core Software Resources: storage and programmatic access for DNA sequence and genome annotationSemantic proximity Read