Article

Unraveling diversity by isolating peptide sequences specific to distinct taxonomic groups

2025-02-08

Abstract excerpt

The identification of succinct, universal fingerprints that enable the characterization of individual taxonomies can reveal insights into trait development and can have widespread applications in pathogen diagnostics, human healthcare, ecology and the characterization of biomes. Here, we investigated the existence of peptide k-mer sequences that are exclusively present in a specific taxonomy and absent in every ot...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: afc4b394-f809-54b3-8e07-d2e0e0cd52bb
DOI: 10.1101/2025.02.05.636664

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Unraveling diversity by isolating peptide sequences specific to distinct taxonomic groupsDOI 10.1101/2025.02.05.636664Read

Unique Pathogen Peptidomes Facilitate Pathogen-Specific Selection and Specialization of MHC Alleles.Semantic proximity Read

Lineage-specific microbial protein prediction enables large-scale exploration of protein ecology within the human gutSemantic proximity Read

Uncovering the Single Amino-Acid Polymorphisms of the Human Gut Ecosystem.Semantic proximity Read

MetaPilot: genome-aware adaptive search-space refinement for unified DDA and DIA metaproteomicsSemantic proximity Read

Conservation motifs - a novel evolutionary-based classification of proteinsSemantic proximity Read

ProEnd: A Comprehensive Database for Identifying HbYX Motif-Containing Proteins Across the Tree of LifeSemantic proximity Read

Genome-wide identification and characterization of β-defensin genes across sixteen Eulipotyphla species: Insights into gene diversification and evolutionary dynamics.Semantic proximity Read

Detection of human unannotated microproteins by mass spectrometry-based proteomics: a community assessmentSemantic proximity Read

Identification of species by multiplex analysis of variable-length sequences.Semantic proximity Read

Pathema: a clade-specific bioinformatics resource center for pathogen researchSemantic proximity Read

Identification and study of Prolyl Oligopeptidases and related sequences in bacterial lineagesSemantic proximity Read

Peptide abundance correlations in metaproteomics enhance taxonomic and functional analysis of the human gut microbiomeSemantic proximity Read