Article

An Optimized Pipeline for Detection of Salmonella Sequences in Shotgun Metagenomics Datasets

2023-07-30

Abstract excerpt

<h4>Background</h4> Culture-independent diagnostic tests (CIDTs) are gaining popularity as tools for detecting pathogens in food. Shotgun sequencing holds substantial promise for food testing as it provides abundant information on microbial communities, but the challenge is in analyzing large and complex sequencing datasets with a high degree of both sensitivity and specificity. Falsely classifying sequencing rea...

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Literature Corpus work: a6eb6b17-9a9b-55cc-9e24-ea705636764b
DOI: 10.1101/2023.07.27.550528

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