Article

StrainSeeker: fast identification of bacterial strains from unassembled sequencing reads using user-provided guide trees

2016-02-19

Abstract excerpt

<h4>Background</h4> Fast, accurate and high-throughput detection of bacteria is in great demand. The present work was conducted to investigate the possibility of identifying both known and unknown bacterial strains from unassembled next-generation sequencing reads using custom-made guide trees. <h4>Results</h4> A program named StrainSeeker was developed that constructs a list of specific k-mers for each node of...

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Literature Corpus work: a37acfe5-bd4a-5431-b476-ad960ef049c0
DOI: 10.1101/040261

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