Article

StrainGE: A toolkit to track and characterize low-abundance strains in complex microbial communities

2021-02-14

Abstract excerpt

Human-associated microbial communities comprise not only complex mixtures of bacterial species, but also mixtures of conspecific strains, the implications of which are mostly unknown since strain level dynamics are underexplored due to the difficulties of studying them. We introduce the Strain Genome Explorer (StrainGE) toolkit, which deconvolves strain mixtures and characterizes component strains at the nucleotid...

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Literature Corpus work: 2e0b3ab0-61a5-5180-a7c0-870ad6cc73ff
DOI: 10.1101/2021.02.14.431013

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