Article

A Computational Toolset for Rapid Identification of SARS-CoV-2, other Viruses, and Microorganisms from Sequencing Data

2020-05-13

Abstract excerpt

<h4>ABSTRACT</h4> In this paper, we present a toolset and related resources for rapid identification of viruses and microorganisms from short-read or long-read sequencing data. We present fastv as an ultra-fast tool to detect microbial sequences present in sequencing data, identify target microorganisms, and visualize coverage of microbial genomes. This tool is based on the k-mer mapping and extension method. K-m...

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Literature Corpus work: f5a21171-4ea9-5257-8df6-f166a5981a8b
DOI: 10.1101/2020.05.12.092163

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