Article

Comparative evaluation of computational methods for reconstruction of human viral genomes

2025-01-22

Abstract excerpt

The increasing availability of viral sequences has led to the emergence of many optimized viral genome reconstruction tools. Given that the number of new tools is steadily increasing, it is complex to identify functional and optimized tools that offer an equilibrium between accuracy and computational resources as well as the features that each tool provides. In this paper, we surveyed open-source computational too...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 84b034ce-27e8-5bc7-97d1-a50a83ff8dfd
DOI: 10.1101/2025.01.17.633368

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Comparative evaluation of computational methods for reconstruction of human viral genomesDOI 10.1101/2025.01.17.633368Read

CRAM compression: practical across-technologies considerations for large-scale sequencing projectsSemantic proximity Read

VirAmp: a galaxy-based viral genome assembly pipelineSemantic proximity Read

Algorithms for Short-Read Viral Haplotype Reconstruction: Challenges, Solutions, and Perspectives.Semantic proximity Read

Evaluation of alignment algorithms for discovery and identification of pathogens using RNA-Seq.Semantic proximity Read

Benchmarking of viral haplotype reconstruction programmes: an overview of the capacities and limitations of currently available programmes.Semantic proximity Read

Allowing mutations in maximal matches boosts genome compression performance.Semantic proximity Read

VirStrain: a strain identification tool for RNA virusesSemantic proximity Read

VStrains: De Novo Reconstruction of Viral Strains via Iterative Path Extraction From Assembly GraphsSemantic proximity Read

Evaluation of sequencing reads at scale using rdevalSemantic proximity Read

De novo haplotype reconstruction in viral quasispecies using paired-end read guided path findingSemantic proximity Read

A Systematic Comparison of Human Mitochondrial Genome Assembly ToolsSemantic proximity Read

Strainline: full-length de novo viral haplotype reconstruction from noisy long readsSemantic proximity Read