Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

VirAmp: a galaxy-based viral genome assembly pipeline

27 Apr 2015

Abstract excerpt

BACKGROUND: Advances in next generation sequencing make it possible to obtain high-coverage sequence data for large numbers of viral strains in a short time. However, since most bioinformatics tools are developed for command line use, the selection and accessibility of computational tools for genome assembly and variation analysis limits the ability of individual labs to perform further bioinformatics analysis....

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Bacteriophages and microbial interactions
Share to Genomics and Phylogenetic Studies
Share to Herpesvirus Infections and Treatments

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Source

Identifiers

PMID: 25918639
DOI: 10.1186/s13742-015-0060-y

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 6 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

VirAmp: a galaxy-based viral genome assembly pipelinePMID 25918639Read ↗

VIGA: an one-stop tool for eukaryotic Virus Identification and Genome Assembly from next-generation-sequencing dataSemantic proximity Read ↗

Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence dataSemantic proximity Read ↗

LazypipeX: Customizable Virome Analysis Pipeline Enabling Fast and Sensitive Virus Discovery from NGS dataSemantic proximity Read ↗

vvv2_align_SE, vvv2_align_PE/vvv2_display: Galaxy-Based Workflows and Tool Designed to Perform, Summarize and Visualize Variant Calling and Annotation in Viral Genome Assemblies.Semantic proximity Read ↗

Rapid genotyping of targeted viral samples using Illumina short-read sequencing data.Semantic proximity Read ↗

Strain-resolved de-novo metagenomic assembly of viral genomes and microbial 16S rRNAsSemantic proximity Read ↗

Easing genomic surveillance: A comprehensive performance evaluation of long-read assemblers across multi-strain mixture data of HIV-1 and Other pathogenic viruses for constructing a user-friendly bioinformatic pipelineSemantic proximity Read ↗

Rapid genome assembly and comparison decode intrastrain variation in human alphaherpesviruses.Semantic proximity Read ↗

vRhyme enables binning of viral genomes from metagenomesSemantic proximity Read ↗

ViWrap: A modular pipeline to identify, bin, classify, and predict viral-host relationships for viruses from metagenomesSemantic proximity Read ↗

Viral genome sequencing methods: benefits and pitfalls of current approachesSemantic proximity Read ↗

Ultrasensitive capture of human herpes simplex virus genomes directly from clinical samples reveals extraordinarily limited evolution in cell cultureSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.