Article

Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition

2017-03-31

Abstract excerpt

Each individual cell produces its own set of transcripts, which is the combined result of genetic variation, transcription regulation and post-transcriptional processing. Due to this combinatorial nature, obtaining the exhaustive set of full-length transcripts for a given species is a never-ending endeavor. Yet, each RNA deep sequencing experiment produces a variety of transcripts that depart from the reference tr...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 6997bd9b-b938-5fad-8556-afef454aa8cb
DOI: 10.1101/122937

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Exhaustive capture of biological variation in RNA-seq data through k-mer decompositionDOI 10.1101/122937Read

DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.Semantic proximity Read

SPLASH2 provides ultra-efficient, scalable, and unsupervised discovery on raw sequencing readsSemantic proximity Read

q-mer analysis: a generalized method for analyzing RNA-Seq dataSemantic proximity Read

Kmerator Suite: design of specific k-mer signatures and automatic metadata discovery in large RNA-Seq datasetsSemantic proximity Read

The contribution of uncharted RNA sequences to tumor identity in lung adenocarcinomaSemantic proximity Read

SCOTCH: isoform-level characterization of gene expression through long-read single-cell RNA sequencingSemantic proximity Read

Reference-free Analysis of scRNA-seq Data Reveals Elevated rRNA and mtRNA Transcription during Neurogenesis in AxolotlSemantic proximity Read

Q-Mer Analysis: A Generalized Method for Analyzing RNA-Seq DataSemantic proximity Read

The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversitySemantic proximity Read

RNA variation as the driver of genomic efficiency and phenotypic complexity.Semantic proximity Read

Scywalker: scalable end-to-end data analysis workflow for nanopore single-cell transcriptome sequencingSemantic proximity Read

Surveying the landscape of RNA isoform diversity and expression across 9 GTEx tissues using long-read sequencing dataSemantic proximity Read