Article

Bayesian inference of ancestral recombination graphs for bacterial populations

2016-06-15

Abstract excerpt

Homologous recombination is a central feature of bacterial evolution, yet confounds traditional phylogenetic methods. While a number of methods specific to bacterial evolution have been developed, none of these permit joint inference of a bacterial recombination graph and associated parameters. In this paper, we present a new method which addresses this shortcoming. Our method uses a novel Markov chain Monte Carlo...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 5d68575b-f027-5e5c-92ee-b4bc79f83fa0
DOI: 10.1101/059105

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Bayesian inference of ancestral recombination graphs for bacterial populationsDOI 10.1101/059105Read

Inference of the properties of the recombination process from whole bacterial genomes.Semantic proximity Read

Detection of recombination events in bacterial genomes from large population samplesSemantic proximity Read

A phylogenetic method to perform genome-wide association studies in microbes that accounts for population structure and recombinationSemantic proximity Read

Homologous Recombination Shapes the Architecture and Evolution of Bacterial GenomesSemantic proximity Read

Bayesian inference of infectious disease transmission from whole genome sequence dataSemantic proximity Read

A Bayesian approach to infer recombination patterns in coronavirusesSemantic proximity Read

A phylogenetic method to perform genome-wide association studies in microbes that accounts for population structure and recombination.Semantic proximity Read

Correlated Mutations and Homologous Recombination Within Bacterial Populations.Semantic proximity Read

How recombination and clonal evolution shape bacterial lineages and genomes.Semantic proximity Read

A Bayesian model of acquisition and clearance of bacterial colonization incorporating within-host variationSemantic proximity Read

Recombination within natural populations of pathogenic bacteria: short-term empirical estimates and long-term phylogenetic consequences.Semantic proximity Read

Bayesian Inference of Pathogen Phylogeography using the Structured Coalescent ModelSemantic proximity Read