Article

Targeted decontamination of sequencing data with CLEAN

2023-08-06

Abstract excerpt

<h4>ABSTRACT</h4> Many biological and medical questions are answered based on the analysis of sequence data. However, we can find contamination, artificial spike-ins, and overrepresented rRNA sequences in various read collections and assemblies. In particular, spike-ins used as controls, as those known from Illumina or Nanopore data, are often not considered as contaminants and also not appropriately removed duri...

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Literature Corpus work: 49a2ae16-d074-57e2-b943-05365bb92f20
DOI: 10.1101/2023.08.05.552089

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