Article

<i>In silico</i> analyses identifies sequence contamination thresholds for Nanopore-generated SARS-CoV2 sequences

2023-09-26

Abstract excerpt

The SARS-CoV-2 pandemic has brought molecular biology and genomic sequencing into the public consciousness and lexicon. With an emphasis on rapid turnaround, genomic data has been used to inform both diagnostic and surveillance decisions for the current pa ndemic at a previously unheard-of scale. The surge in the submission of genomic data to publicly-available databases has proved essential as comparing different...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 9e41869c-b2e4-5cc4-95ab-f06563ca5022
DOI: 10.1101/2023.09.26.559465

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

<i>In silico</i> analyses identifies sequence contamination thresholds for Nanopore-generated SARS-CoV2 sequencesDOI 10.1101/2023.09.26.559465Read

Recommendations for Uniform Variant Calling of SARS-CoV-2 Genome Sequence across Bioinformatic WorkflowsSemantic proximity Read

Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysisSemantic proximity Read

Comparison of SARS-CoV-2 sequencing using the ONT GridION and the Illumina MiSeqSemantic proximity Read

ConSeqUMI, an error-free nanopore sequencing pipeline to identify and extract individual nucleic acid molecules from heterogeneous samplesSemantic proximity Read

Targeted decontamination of sequencing data with CLEANSemantic proximity Read

Molecular Genetic Analysis of SARS-CoV-2 Lineages in ArmeniaSemantic proximity Read

DNA spike-ins enable confident interpretation of SARS-CoV-2 genomic data from amplicon-based sequencingSemantic proximity Read

The Human “Contaminome”: Bacterial, Viral, and Computational Contamination in Whole Genome Sequences from 1,000 FamiliesSemantic proximity Read

Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysisSemantic proximity Read

Enhancing public health surveillance: a comparative study of platform-specific and hybrid assembly approaches in SARS-CoV-2 genome sequencing.Semantic proximity Read

Rapid and Inexpensive Whole-Genome Sequencing of SARS-CoV-2 using 1200 bp Tiled Amplicons and Oxford Nanopore Rapid BarcodingSemantic proximity Read

Next-Generation Sequencing (NGS) in COVID-19: A Tool for SARS-CoV-2 Diagnosis, Monitoring New Strains and Phylodynamic Modeling in Molecular EpidemiologySemantic proximity Read