Article

SquiDBase: a community resource of raw nanopore data from microbes

2025-05-01

Abstract excerpt

<h4>ABSTRACT</h4> Experimental data-driven research relies on raw data, which consist of unprocessed experimental outputs, whereas derived data are transformed through a number of processing steps to reveal specific insights. Such processing, however, can potentially introduce biases or information loss, compromising transparency and reproducibility. In nucleic acid sequencing, nucleotide sequences stored in the...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 194a2f00-f15e-59b4-8c03-8a91ad5a4341
DOI: 10.1101/2025.04.28.650941

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

SquiDBase: a community resource of raw nanopore data from microbesDOI 10.1101/2025.04.28.650941Read

ConSeqUMI, an error-free nanopore sequencing pipeline to identify and extract individual nucleic acid molecules from heterogeneous samplesSemantic proximity Read

CZ ID: a cloud-based, no-code platform enabling advanced long read metagenomic analysisSemantic proximity Read

A whole-genome sequencing dataset of nanopore raw signals for bacterial genotyping and methylation analysis.Semantic proximity Read

Flexible and efficient handling of nanopore sequencing signal data with <i>slow5tools</i>Semantic proximity Read

Fast and sensitive mapping of error-prone nanopore sequencing reads with GraphMapSemantic proximity Read

Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysisSemantic proximity Read

Streamlining remote nanopore data access with <i>slow5curl</i>Semantic proximity Read

Targeted decontamination of sequencing data with CLEANSemantic proximity Read

Evaluation of Oxford Nanopore Technologies workflows for genomic epidemiology of outbreak-associated bacterial isolates in the clinical setting.Semantic proximity Read

Application of Nanopore Sequencing in the Diagnosis and Treatment of Pulmonary InfectionsSemantic proximity Read

Evaluation of Oxford Nanopore Technologies workflows for genomic epidemiology of outbreak‐associated bacterial isolates in the clinical settingSemantic proximity Read

poreCov-An Easy to Use, Fast, and Robust Workflow for SARS-CoV-2 Genome Reconstruction via Nanopore SequencingSemantic proximity Read