Article

Recentrifuge: robust comparative analysis and contamination removal for metagenomics

2017-09-19

Abstract excerpt

Metagenomic sequencing is becoming widespread in biomedical and environmental research, and the pace is increasing even more thanks to nanopore sequencing. With a rising number of samples and data per sample, the challenge of efficiently comparing results within a specimen and between specimens arises. Reagents, laboratory, and host related contaminants complicate such analysis. Contamination is particularly criti...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: e2a06454-3532-5ffe-b1cd-7cecc3b7e2cf
DOI: 10.1101/190934

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Recentrifuge: robust comparative analysis and contamination removal for metagenomicsDOI 10.1101/190934Read

Mitigation and detection of putative microbial contaminant reads from long-read metagenomic datasetsSemantic proximity Read

A metagenomic DNA sequencing assay that is robust against environmental DNA contaminationSemantic proximity Read

Separating the signal from the noise in metagenomic cell-free DNA sequencingSemantic proximity Read

Speed, accuracy, sensitivity and quality control choices for detecting clinically relevant microbes in whole blood from patientsSemantic proximity Read

Effects of microbiome rare taxa filtering on statistical analysisSemantic proximity Read

Separating the signal from the noise in metagenomic cell-free DNA sequencingSemantic proximity Read

PanGIA: A Metagenomics Analytical Framework for Routine Biosurveillance and Clinical Pathogen DetectionSemantic proximity Read

Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics dataSemantic proximity Read

Targeted decontamination of sequencing data with CLEANSemantic proximity Read

Diverse and widespread contamination evident in the unmapped depths of high throughput sequencing dataSemantic proximity Read

A systematic NGS-based approach for contaminant detection and functional inferenceSemantic proximity Read

Managing Contamination and Diverse Bacterial Loads in 16S rRNA Deep Sequencing of Clinical Samples: Implications of the Law of Small NumbersSemantic proximity Read