Back to search

Article

Comparison of gene-by-gene and genome-wide short nucleotide sequence based approaches to define the global population structure of <i>Streptococcus pneumoniae</i>

2024-06-02

Abstract excerpt

Defining the population structure of a pathogen is a key part of epidemiology, as genomically related isolates are likely to share key clinical features such as antimicrobial resistance profiles and invasiveness. Multiple different methods are currently used to cluster together closely- related genomes, potentially leading to inconsistency between studies. Here, we use a global dataset of 26,306 S. pneumoniae gen...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work
7be56847-a460-5dbd-9a52-b7dc02c0b3b9
DOI
10.1101/2024.05.29.596230
Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest
Interactive article relationship graphSelect a related publication card to move it into the centre and load its closest explainable connections. Solid lines are source-backed structured connections. Dashed lines are semantic discovery signals and are not scientific evidence.
Comparison of gene-by-gene and genome-wide short nucleotide sequence based approaches to define the global population structure of <i>Streptococcus pneumoniae</i>DOI 10.1101/2024.05.29.596230
Development of the Pneumococcal Genome Library, a core genome multilocus sequence typing scheme, and a taxonomic life identification number barcoding system to investigate and define pneumococcal population structureSemantic proximity
Development of the Pneumococcal Genome Library, a core genome multilocus sequence typing scheme, and a taxonomic life identification number barcoding system to investigate and define pneumococcal population structureSemantic proximity
A dual barcoding approach to bacterial strain nomenclature: Genomic taxonomy of <i>Klebsiella pneumoniae</i> strainsSemantic proximity
A Dual Barcoding Approach to Bacterial Strain Nomenclature: Genomic Taxonomy of Klebsiella pneumoniae Strains.Semantic proximity
Identification and capsular serotype sequetyping of <i>Streptococcus pneumoniae</i> strainsSemantic proximity
Genomic surveillance framework and global population structure for <i>Klebsiella pneumoniae</i>Semantic proximity
A multilocus sequence typing scheme for Streptococcus pneumoniae: identification of clones associated with serious invasive disease.Semantic proximity
A novel core genome clustering method proposed for population structure analysis and genotyping of bacterial genomes.Semantic proximity
High resolution <i>Streptococcus pyogenes</i> core genome MLST and LIN coding scheme for outbreak detectionSemantic proximity
Patterns of Global Genetic Diversity of Streptococcus pneumoniae Inferred Based on Archived Multilocus Sequence Typing DataSemantic proximity
Novel Multilocus Sequence Typing and Global Sequence Clustering Schemes for Characterizing the Population Diversity of Streptococcus mitisSemantic proximity
Global genomic similarity and core genome sequence diversity of the Streptococcus genus as a toolkit to identify closely related bacterial species in complex environments.Semantic proximity
Select a neighboring publication to make it the new centre.