Article

Genealogical inference and more flexible sequence clustering using iterative PopPUNK

2022-10-10

Abstract excerpt

Bacterial genome data are accumulating at an unprecedented speed due the routine use of sequencing in clinical diagnoses, public health surveillance and population genetics studies. Genealogical reconstruction is fundamental to many of these uses, however, inferring genealogy from large-scale genome datasets quickly, accurately, and flexibly is still a challenge. Here, we extend an alignment- and annotation-free m...

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Literature Corpus work: 153c446a-931d-51ae-9306-b449ad53400c
DOI: 10.1101/2022.10.08.511450

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