Article

Infectious Disease Dynamics Inferred from Genetic Data via Sequential Monte Carlo

2016-12-23

Abstract excerpt

Genetic sequences from pathogens can provide information about infectious disease dynamics that may supplement or replace information from other epidemiological observations. Currently available methods first estimate phylogenetic trees from sequence data, then estimate a transmission model conditional on these phylogenies. Outside limited classes of models, existing methods are unable to enforce logical consisten...

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Literature Corpus work: 23d47bc1-9a4c-5a35-9f17-e7401ea5ff32
DOI: 10.1101/096396

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