Article

MetaPGN: a pipeline for construction and graphical visualization of annotated pangenome networks

2018-08-24

Abstract excerpt

Pangenome analyses facilitate the interpretation of genetic diversity and evolutionary history of a taxon. However, there is an urgent and unmet need to develop new tools for advanced pangenome construction and visualization, especially for metagenomic data. Here we present an integrated pipeline, named MetaPGN, for construction and graphical visualization of pangenome network from either microbial genomes or meta...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 06e850eb-cf12-5ec1-a5e9-f5b5eccc2834
DOI: 10.1101/398636

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

MetaPGN: a pipeline for construction and graphical visualization of annotated pangenome networksDOI 10.1101/398636Read

PGAP-X: extension on pan-genome analysis pipeline.Semantic proximity Read

VRPG: an interactive visualization framework for reference-projected pangenome graphSemantic proximity Read

Pangenome graphs and their applications in biodiversity genomics.Semantic proximity Read

PPanGGOLiN: depicting microbial diversity via a partitioned pangenome graphSemantic proximity Read

PPanG: a precision pangenome browser enabling nucleotide-level analysis of genomic variations in individual genomes and their graph-based pangenome.Semantic proximity Read

panModule: detecting conserved modules in the variable regions of a pangenome graphSemantic proximity Read

Panorama: A robust pangenome-based method for predicting and comparing biological systems across species.Semantic proximity Read

Exploring differences across pangenome-graph representations using <i>Escherichia coli</i> O157:H7 as a modelSemantic proximity Read

GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens.Semantic proximity Read

Cluster efficient pangenome graph construction with nf-core/pangenomeSemantic proximity Read

Gene-centric metagenomic analyses reveal microbiome functional insights into diseasesSemantic proximity Read

Comparative metagenomics using pan-metagenomic graphsSemantic proximity Read