Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

PGAP-X: extension on pan-genome analysis pipeline.

BMC genomics - 19 Jan 2018

Zhao Yongbing, Sun Chen, Zhao Dongyu, Zhang Yadong, You Yang, Jia Xinmiao, Yang Junhui, Wang Lingping, Wang Jinyue, Fu Haohuan, Kang Yu, Chen Fei, Yu Jun, Wu Jiayan, Xiao Jingfa

Abstract excerpt

BACKGROUND: Since PGAP (pan-genome analysis pipeline) was published in 2012, it has been widely employed in bacterial genomics research. Though PGAP has integrated several modules for pan-genomics analysis, how to properly and effectively interpret and visualize the results data is still a challenge. RESULT: To well present bacterial genomic characteristics, a novel cross-platform software was developed, named...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Chlamydia trachomatis
Share to Computer Graphics

Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

Share to Evolution, Molecular

Share to Genetic Variation

Share to Genome, Bacterial

Share to High-Throughput Nucleotide Sequencing

Share to Software

Share to Streptococcus pneumoniae

Source

Open in PubMed Open full text

Identifiers

PMID: 29363431
DOI: 10.1186/s12864-017-4337-7
PMCID: PMC5780747

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

PGAP-X: extension on pan-genome analysis pipeline.PMID 29363431Read ↗

MetaPGN: a pipeline for construction and graphical visualization of annotated pangenome networksSemantic proximity Read ↗

PPanG: a precision pangenome browser enabling nucleotide-level analysis of genomic variations in individual genomes and their graph-based pangenome.Semantic proximity Read ↗

PATO: Pangenome Analysis ToolkitSemantic proximity Read ↗

VRPG: an interactive visualization framework for reference-projected pangenome graphSemantic proximity Read ↗

Whole-genome-based <i>Helicobacter pylori</i> geographic surveillance: a visualized and expandable webtoolSemantic proximity Read ↗

Genomic characteristics of Streptococcus agalactiae based on the pan-genome orthologous group analysis according to invasiveness and capsular genotype.Semantic proximity Read ↗

Panorama: A robust pangenome-based method for predicting and comparing biological systems across species.Semantic proximity Read ↗

The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities.Semantic proximity Read ↗

A Visual Framework of Meta Genomic Analysis on Variations of Whole SARS-CoV-2 SequencesSemantic proximity Read ↗

PPanGGOLiN: depicting microbial diversity via a partitioned pangenome graphSemantic proximity Read ↗

panModule: detecting conserved modules in the variable regions of a pangenome graphSemantic proximity Read ↗

PneumoBrowse 2: An integrated visual platform for curated genome annotation and multiomics data analysis of <i>Streptococcus pneumoniae</i>Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.