Article
GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens.
Genome research - 1 Sept 2018
Zhou Zhemin, Alikhan Nabil-Fareed, Sergeant Martin J, Luhmann Nina, Vaz Cátia, Francisco Alexandre P, Carriço João André, Achtman Mark
Abstract excerpt
Current methods struggle to reconstruct and visualize the genomic relationships of large numbers of bacterial genomes. GrapeTree facilitates the analyses of large numbers of allelic profiles by a static "GrapeTree Layout" algorithm that supports interactive visualizations of large trees within a web browser window. GrapeTree also implements a novel minimum spanning tree algorithm (MSTree V2) to reconstruct...
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