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Article

Protein folds and families: sequence and structure alignments.

Nucleic acids research - 1 Jan 1999

Holm L, Sander C

Abstract excerpt

Dali and HSSP are derived databases organizing protein space in the structurally known regions. We use an automatic structure alignment program (Dali) for the classification of all known 3D structures based on all-against-all comparison of 3D structures in the Protein Data Bank. The HSSP database associates 1D sequences with known 3D structures using a position-weighted dynamic programming method for sequence...

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Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

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Identifiers

PMID: 9847191
DOI: 10.1093/nar/27.1.244
PMCID: PMC148146

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Source receipt: pubmed, retrieved 7 Sept 2026.

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