Article
Characterization and visualization of RNA secondary structure Boltzmann ensemble via information theory.
BMC bioinformatics - 5 Mar 2018
Lin Luan, McKerrow Wilson H, Richards Bryce, Phonsom Chukiat, Lawrence Charles E
Abstract excerpt
BACKGROUND: The nearest neighbor model and associated dynamic programming algorithms allow for the efficient estimation of the RNA secondary structure Boltzmann ensemble. However because a given RNA secondary structure only contains a fraction of the possible helices that could form from a given sequence, the Boltzmann ensemble is multimodal. Several methods exist for clustering structures and finding those...
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