Article
Biological causes and impacts of rugged tree landscapes in phylodynamic inference.
Proceedings of the National Academy of Sciences of the United States of America - 13 Jan 2026
Gao Jiansi, Brusselmans Marius, Carvalho Luiz M, Suchard Marc A, Baele Guy, Matsen Frederick A
Abstract excerpt
Phylodynamic analysis has been instrumental in elucidating epidemiological and evolutionary dynamics of pathogens. Bayesian phylodynamics integrates out phylogenetic uncertainty, which is typically substantial in phylodynamic datasets due to limited genetic diversity. Phylodynamic inference does not, however, scale with modern datasets, partly due to difficulties in traversing tree space. Here, we characterize...
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