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Article

Variant calling and genotyping accuracy of ddRAD-seq: Comparison with 20X WGS in layers.

PloS one - 1 Jan 2024

Doublet Mathilde, Degalez Fabien, Lagarrigue Sandrine, Lagoutte Laetitia, Gueret Elise, Allais Sophie, Lecerf Frédéric

Abstract excerpt

Whole Genome Sequencing (WGS) remains a costly or unsuitable method for routine genotyping of laying hens. Until now, breeding companies have been using or developing SNP chips. Nevertheless, alternatives methods based on sequencing have been developed. Among these, reduced representation sequencing approaches can offer sequencing quality and cost-effectiveness by reducing the genomic regions covered by...

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Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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Identifiers

PMID: 39058708
DOI: 10.1371/journal.pone.0298565
PMCID: PMC11280156

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