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Article

A Pangenome Approach to Detect and Genotype TE Insertion Polymorphisms.

Methods in molecular biology (Clifton, N.J.) - 1 Jan 2023

Groza Cristian, Bourque Guillaume, Goubert Clément

Abstract excerpt

Pangenome graphs are flexible data structures that contain the genetic variation that exists in a population of genomes and describe the sequences of the many possible ensuing haplotypes. Here, we use such a pangenome graph to represent and genotype transposable element (TE) polymorphisms. By combining the transposable element annotation (Alus, L1s, and SVAs) of the human genome reference with novel transposable...

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PMID: 36449159
DOI: 10.1007/978-1-0716-2883-6_5

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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